Tag: genetic code (page 1 of 2)

Lab for genetic modification of human embryos just $2,000 away – report


Reuters / Christian Charisius



Reuters

With the right expertise in molecular biology, one could start a basic laboratory to modify human embryos using a genome-editing computer technique all for a couple thousand dollars, according to a new report.

Genetic modification has received heightened scrutiny recently following last week’s announcement that Chinese researchers had, for the first time, successfully edited human embryos’ genomes. 
The team at Sun Yat-Sen University in Guangzhou, China, used CRISPR (clustered regularly interspaced palindromic repeats), a technique that relies on “cellular machinery” used by bacteria in defense against viruses. 

This machinery is copied and altered to create specific gene-editing complexes, which include the wonder enzyme Cas9. The enzyme works its way into the DNA and can be used to alter the molecule from the inside. The combination is attached to an RNA guide that takes the gene-editing complex to its target, telling Cas9 where to operate. 

Use of the CRISPR technique is not necessarily relegated to the likes of cash-flush university research operations, according to a report by Business Insider. 


Geneticist George Church, who runs a top CRISPR research program at the Harvard Medical School, said the technique could be employed with expert knowledge and about half of the money needed to pay for an average annual federal healthcare plan in 2014 -- not to mention access to human embryos. 

"You could conceivably set up a CRISPR lab for $2,000,” he said, according to Business Insider. 

Other top researchers have echoed this sentiment. 

"Any scientist with molecular biology skills and knowledge of how to work with [embryos] is going to be able to do this,” Jennifer Doudna, a biologist at the University of California, Berkeley, recently told MIT Tech Review, which reported that Doudna co-discovered how to edit genetic code using CRISPR in 2012. 

Last week, the Sun Yat-Sen University research team said it attempted to cure a gene defect that causes beta-thalassemia (a genetic blood disorder that could lead to severe anemia, poor growth, skeletal abnormalities and even death) by editing the germ line. For that purpose they used a gene-editing technique based on injecting non-viable embryos with a complex, which consists of a protective DNA element obtained from bacteria and a specific protein. 

"I suspect this week will go down as a pivotal moment in the history of medicine," wrote science journalist Carl Zimmer for National Geographic.


Response to the new research has been mixed. Some experts say the gene editing could help defeat genetic diseases even before birth. Others expressed concern. 

“At present, the potential safety and efficacy issues arising from the use of this technology must be thoroughly investigated and understood before any attempts at human engineering are sanctioned, if ever, for clinical testing,” a group of scientists, including some who had worked to develop CRISPR, warned in Science magazine. 

Meanwhile, the director of the US National Institutes for Health (NIH) said the agency would not fund such editing of human embryo genes. 

“Research using genomic editing technologies can and are being funded by NIH,” Francis Collins said Wednesday. “However, NIH will not fund any use of gene-editing technologies in human embryos. The concept of altering the human germline in embryos for clinical purposes ... has been viewed almost universally as a line that should not be crossed.”

Although the discovery of CRISPR sequences dates back to 1987 – when it was first used to cure bacteria of viruses – its successes in higher animals and humans were only achieved in 2012-13, when scientists achieved a revolution by combining the resulting treatment system with Cas9 for the first time. 


On April 17, the MIT’s Broad Institute announced that has been awarded the first-ever patent for working with the Crisp-Cas9 system. 

The institute’s director, Eric Lander, sees the combination as “an extraordinary, powerful tool. The ability to edit a genome makes it possible to discover the biological mechanisms underlying human biology.”

The system’s advantage over other methods is in that it can also target several genes at the same time, working its way through tens of thousands of so-called 'guide' RNA sequences that lead them to the weapon to its DNA targets. 

Meanwhile, last month in the UK, a healthy baby was born from an embryo screened for genetic diseases, using karyomapping, a breakthrough testing method that allows doctors to identify about 60 debilitating hereditary disorders.

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Surprising discovery finds proteins can be assembled without genetic instructions ~ Sends scientists back to drawing board





Excerpt from news.bioscholar.com


A study has shown for the first time that the building blocks of proteins can be assembled without instructions from DNA or messenger RNA (mRNA).

A protein, Rqc2, was found playing a role similar to that of mRNA and specifying which amino acids, the building blocks of proteins, to be added in cell mechanism.

“In this case, we have a protein playing a role normally filled by mRNA,” said Adam Frost, assistant professor at University of California, San Francisco.

“This surprising discovery reflects how incomplete our understanding of biology is,” said first author Peter Shen, a postdoctoral fellow in biochemistry at the University of Utah in the US.

The researchers added that the findings have implications for new therapies to treat neurodegenerative diseases such as Alzheimer’s, Amyotrophic lateral sclerosis (ALS) or Huntington’s.

The researchers described that ribosomes are machines on a protein assembly line, linking together amino acids in an order specified by the genetic code.

RCQ protein
A new finding goes against dogma, showing for the first time that the building blocks of a protein, called amino acids, can be assembled by another protein, and without genetic instructions). The Rqc2 protein (yellow) binds tRNAs (dark blue, teal) which add amino acids (bright spot in middle) to a partially made protein (green). The complex binds the ribosome (white). Image Credit: Janet Iwasa, Ph.D., University of Utah

When something goes wrong, the ribosome is generally disassembled, the blueprint is discarded and the partly made protein is recycled.

The new study, however, revealed that before the incomplete protein is recycled, Rqc2 can prompt the ribosomes to add just two amino acids (of a total of 20) – alanine and threonine – over and over, and in any order.

The nonsensical sequence likely serves specific purposes. The code could signal that the partial protein must be destroyed, or it could be part of a test to see whether the ribosome is working properly, the researchers noted.

For the study, they fine-tuned a technique called cryo-electron microscopy to flash freeze, and then visualse, the quality control machinery in cells in action.

The findings appeared in the journal Science.

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Amazon, Google, IBM & Microsoft Want to Store Your Genome


Excerpt from  technologyreview.com


By Antonio Regalado

 For $25 a year, Google will keep a copy of any genome in the cloud.

Google is approaching hospitals and universities with a new pitch. Have genomes? Store them with us.

The search giant’s first product for the DNA age is Google Genomics, a cloud computing service that it launched last March but went mostly unnoticed amid a barrage of high profile R&D announcements from Google...

Google Genomics could prove more significant than any of these moonshots. Connecting and comparing genomes by the thousands, and soon by the millions, is what’s going to propel medical discoveries for the next decade. The question of who will store the data is already a point of growing competition between Amazon, Google, IBM, and Microsoft.

Google began work on Google Genomics 18 months ago, meeting with scientists and building an interface, or API, that lets them move DNA data into its server farms and do experiments there using the same database technology that indexes the Web and tracks billions of Internet users.

This flow of data is smaller than what is routinely handled by large Internet companies (over two months, Broad will produce the equivalent of what gets uploaded to YouTube in one day) but it exceeds anything biologists have dealt with. That’s now prompting a wide effort to store and access data at central locations, often commercial ones. The National Cancer Institute said last month that it would pay $19 million to move copies of the 2.6 petabyte Cancer Genome Atlas into the cloud. Copies of the data, from several thousand cancer patients, will reside both at Google Genomics and in Amazon’s data centers.

The idea is to create “cancer genome clouds” where scientists can share information and quickly run virtual experiments as easily as a Web search, says Sheila Reynolds, a research scientist at the Institute for Systems Biology in Seattle. “Not everyone has the ability to download a petabyte of data, or has the computing power to work on it,” she says.

Also speeding the move of DNA data to the cloud has been a yearlong price war between Google and Amazon. Google says it now charges about $25 a year to store a genome, and more to do computations on it. Scientific raw data representing a single person’s genome is about 100 gigabytes in size, although a polished version of a person’s genetic code is far smaller, less than a gigabyte. That would cost only $0.25 cents a year.


The bigger point, he says, is that medicine will soon rely on a kind of global Internet-of-DNA which doctors will be able to search. “Our bird’s eye view is that if I were to get lung cancer in the future, doctors are going to sequence my genome and my tumor’s genome, and then query them against a database of 50 million other genomes,” he says. “The result will be ‘Hey, here’s the drug that will work best for you.’ ”


At Google, Glazer says he began working on Google Genomics as it became clear that biology was going to move from “artisanal to factory-scale data production.” He started by teaching himself genetics, taking an online class, Introduction to Biology, taught by Broad’s chief, Eric Lander. He also got his genome sequenced and put it on Google’s cloud.

Glazer wouldn’t say how large Google Genomics is or how many customers it has now, but at least 3,500 genomes from public projects are already stored on Google’s servers. He also says there’s no link, as of yet, between Google’s cloud and its more speculative efforts in health care, like the company Google started this year, called Calico, to investigate how to extend human lifespans. “What connects them is just a growing realization that technology can advance the state of the art in life sciences,” says Glazer.

Datta says some Stanford scientists have started using a Google database system, BigQuery, that Glazer’s team made compatible with genome data. It was developed to analyze large databases of spam, web documents, or of consumer purchases. But it can also quickly perform the very large experiments comparing thousands, or tens of thousands, of people’s genomes that researchers want to try. “Sometimes they want to do crazy things, and you need scale to do that,” says Datta. “It can handle the scale genetics can bring, so it’s the right technology for a new problem.”

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Is this the origins of the Anunnaki story? ~ Neanderthals & humans first mated 50,000 years ago, DNA reveals


Early European
Universal human: This reconstruction is of a different modern human from Romania 43,000 years ago. But it gives some clues to what the Siberian man may have looked like. This population was not long out of Africa and genetically midway between Europeans and Asians
Excerpt from bbc.com
The genome sequence from a thigh bone found in Siberia shows the first episode of mixing occurred between 50,000 and 60,000 years ago.

The male hunter is one of the earliest modern humans discovered in Eurasia.

The study in Nature journal also supports the finding that our species emerged from Africa some 60,000 years ago, before spreading around the world.

The analysis raises the possibility that the human line first emerged millions of years earlier than current estimates.

"We seem to have caught evolution red handed”
Prof Svante Paabo Max-Plack Institute
The work of Prof Svante Paabo, from the Max Planck Institute in Leipzig, Germany, is rewriting the story of humanity. Prof Paabo and his colleagues have pioneered methods to extract DNA from ancient human remains and read its genetic code. From this sequence, Prof Paabo has been able to decipher an increasingly detailed story of modern humans as they spread across the globe.

"The amazing thing is that we have a good genome of a 45,000 year old person who was close to the ancestor of all present-day humans outside Africa," Prof Paabo told BBC News. 

Prof Paabo has analysed DNA from part of a leg bone of a man that lived in Western Siberia around 45,000 years ago. This is a key moment at the cross roads of the world, when modern humans were on the cusp of an expansion into Europe and Asia.


Thigh bone

Prof Paabo Svante has unlocked the secrets contained in this femur from one of the earliest humans discovered out of Africa.
The key finding was that the man had large, unshuffled chunks of DNA from a now extinct species of human, Neanderthals who evolved outside of Africa. 

"Our analysis shows that modern humans had already interbred with Neanderthals then and we can determine when that first happened much more precisely than we could before." 

Prof Paabo and his team published research in 2010 which showed that all non-African humans today have Neanderthal DNA. But that genetic material has been broken into much smaller chunks over the generations. 

By extrapolating the size of DNA chunks backwards, Prof Paabo and his colleagues were able to calculate when the first interbreeding with Neanderthals occurred. His study shows that it was between 50,000 and 60,000 years ago.

According to Prof Chris Stringer of the Natural History Museum in London, this early interbreeding might indicate when the ancestors of people living outside of Africa today made their first steps out of the continent in which our species evolved more than 150,000 years ago.

Prof Stringer was among those who believed that the first exit by modern humans from Africa that give rise to people outside of Africa today might have happened earlier, possibly 100,000 years ago. The evidence from Prof Paabo's research is persuading him that it was now much later.


River Irtysh

Crossroads for humanity: the river Irtysh in Western Siberia where the bone was found. 


Prof Paabo also compared the DNA of the man living 45,000 years ago with those living today. He found that the man was genetically midway between Europeans and Asians - indicating he lived close to the time before our species separated into different racial groups.

Prof Paabo was also able to estimate the rate at which human DNA has changed or mutated over the millennia. He found that it was slower than the rate suggested by fossil evidence and similar to what has been observed in families. 

"We have caught evolution red handed!" Prof Paabo said gleefully.
This raises the possibility that the very first species of the human line separated from apes 10 or 11 million years ago - rather than the five or six million years ago that genetic evidence had previously suggested. 

But he stressed in his research paper that much more analysis was needed before re-dating the emergence of the human line.

"We caution that (mutation) rates may have changed over time and may differ between human populations," he said.

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Scientists Admit There Is a Second, Secret DNA Code Which Controls Genes

Contributed by Michael ForresterThe fascinating and recent discovery of a new, second DNA code further lends credence to what metaphysical scientists have been saying for millennia -- the body speaks two different languages.Since the genetic code was deciphered in the 1960s, researchers have assumed that it was used exclusively to write information about proteins.But biologists have suspected for years that some kind of epigenetic inheritance occurs at the cellular level. The different [...]

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Galactic Federation of Light ~ Morpheus Sirius Archangel June-10-2013

Morpheus Sirius ArchAngel
5/10/2013 – Morpheus sirius.
In the infinitude of existence time does not exist but due to the universe density levels, the strata of energetic streaming through alternate vibratory densities

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List of Ascension Symptoms, Predictions and the New Angelic Human – 2012

a message from The Blue Ray channeled by Shekina Rose / Blue Ray  Friday, 30 March, 2012 The Blue Ray Beings are an ultra-sensitive, empathic soul group like the Indigos that came from many different, ascended planets and light realms to enlighten...

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Rose Ray Mother Mary Visitations Activating the Sacred Order of the Mother

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6 March 2012

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Evolve, and Understand the Psychology of your Brain and DNA

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We have to learn to think like our nervous system. To think like DNA. There are certain principles of reality/self-hood that can be found in human activity and then in every scale of reality, all the way down to th...

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Blue Ray: Negative Thoughtform Release with the Archangels

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BLUE RAY: 2012 Transcending Linear Time, Higher Frequency Resonances & Ascension Symtoms

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The Blue Ray Beings are an ultra-sensitive, empathic soul group like the Indigos that came from many different ascended planets and light realms to enlighten the genetic code of ...

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Blue Ray > 2012 Supersonic Time Acceleration & Ascension Symptoms

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